IntelliJ Plugin Working Directory

I created a plugin.

It first changes the directory to my project folder.

Then it opens SBT and does the command gen-idea no-sbt-build-module.

When I run it in a scala worksheet, it works.

When I run it from the menu were the plugin interacts, it changes back to default-0ce3ae. (Default directory of IDE?)

Any help?

Thank you,

Erick